From 6132f59d4f03f32e51ac52f9dd4772c226efc65b Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Wed, 19 Apr 2017 15:21:08 +0200 Subject: [PATCH] Fix compile error --- .../utils/intervals/BedRecordList.scala | 34 +++++++------------ 1 file changed, 12 insertions(+), 22 deletions(-) diff --git a/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala b/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala index 5ec5b3a18..8cb516494 100644 --- a/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala +++ b/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala @@ -140,34 +140,24 @@ object BedRecordList { def fromList(records: TraversableOnce[BedRecord]): BedRecordList = fromListWithHeader(records, Nil) /** - * This creates a [[BedRecordList]] based on multiple files - * - * @param bedFiles Input bed files - * @return - */ - def fromFiles(bedFiles: File*) = { - fromFiles(bedFiles, combine = false) - } - - /** - * This creates a [[BedRecordList]] based on multiple files. This method combines overlapping regions - * - * @param bedFiles Input bed files - * @return - */ + * This creates a [[BedRecordList]] based on multiple files. This method combines overlapping regions + * + * @param bedFiles Input bed files + * @return + */ def fromFilesCombine(bedFiles: File*) = { fromFiles(bedFiles, combine = true) } /** - * This creates a [[BedRecordList]] based on multiple files - * - * @param bedFiles Input bed files - * @param combine When true overlaping regions are merged - * @return - */ + * This creates a [[BedRecordList]] based on multiple files + * + * @param bedFiles Input bed files + * @param combine When true overlaping regions are merged + * @return + */ def fromFiles(bedFiles: Seq[File], combine: Boolean = false) = { - val list = bedFiles.foldLeft(empty)((a,b) => fromList(fromFile(b).allRecords ++ a.allRecords)) + val list = bedFiles.foldLeft(empty)((a, b) => fromList(fromFile(b).allRecords ++ a.allRecords)) if (combine) list.combineOverlap else list } -- GitLab