From 6132f59d4f03f32e51ac52f9dd4772c226efc65b Mon Sep 17 00:00:00 2001
From: Peter van 't Hof
Date: Wed, 19 Apr 2017 15:21:08 +0200
Subject: [PATCH] Fix compile error
---
.../utils/intervals/BedRecordList.scala | 34 +++++++------------
1 file changed, 12 insertions(+), 22 deletions(-)
diff --git a/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala b/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
index 5ec5b3a18..8cb516494 100644
--- a/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
+++ b/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
@@ -140,34 +140,24 @@ object BedRecordList {
def fromList(records: TraversableOnce[BedRecord]): BedRecordList = fromListWithHeader(records, Nil)
/**
- * This creates a [[BedRecordList]] based on multiple files
- *
- * @param bedFiles Input bed files
- * @return
- */
- def fromFiles(bedFiles: File*) = {
- fromFiles(bedFiles, combine = false)
- }
-
- /**
- * This creates a [[BedRecordList]] based on multiple files. This method combines overlapping regions
- *
- * @param bedFiles Input bed files
- * @return
- */
+ * This creates a [[BedRecordList]] based on multiple files. This method combines overlapping regions
+ *
+ * @param bedFiles Input bed files
+ * @return
+ */
def fromFilesCombine(bedFiles: File*) = {
fromFiles(bedFiles, combine = true)
}
/**
- * This creates a [[BedRecordList]] based on multiple files
- *
- * @param bedFiles Input bed files
- * @param combine When true overlaping regions are merged
- * @return
- */
+ * This creates a [[BedRecordList]] based on multiple files
+ *
+ * @param bedFiles Input bed files
+ * @param combine When true overlaping regions are merged
+ * @return
+ */
def fromFiles(bedFiles: Seq[File], combine: Boolean = false) = {
- val list = bedFiles.foldLeft(empty)((a,b) => fromList(fromFile(b).allRecords ++ a.allRecords))
+ val list = bedFiles.foldLeft(empty)((a, b) => fromList(fromFile(b).allRecords ++ a.allRecords))
if (combine) list.combineOverlap
else list
}
--
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