From 61128d4e6738de0697ed4c4bcab19cef77c962c4 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 8 Nov 2014 18:55:15 +0100
Subject: [PATCH] Added constructor
---
.../scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
index 1ccaf687b..ea22e61d2 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeAlleles.scala
@@ -36,6 +36,13 @@ class MergeAlleles(val root: Configurable) extends BiopetJavaCommandLineFunction
}
object MergeAlleles extends ToolCommand {
+ def apply(root: Configurable, input: List[File], output: File): MergeAlleles = {
+ val mergeAlleles = new MergeAlleles(root)
+ mergeAlleles.input = input
+ mergeAlleles.output = output
+ return mergeAlleles
+ }
+
case class Args(inputFiles: List[File] = Nil, outputFile: File = null, reference: File = null) extends AbstractArgs
class OptParser extends AbstractOptParser {
--
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