Commit 600c5f11 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix for multiple tabs in contams file

parent f73038d3
...@@ -52,8 +52,8 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r ...@@ -52,8 +52,8 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r
def getSeqs(file: File) = { def getSeqs(file: File) = {
if (file != null) { if (file != null) {
(for ( (for (
line <- Source.fromFile(file).getLines() if line.startsWith("#"); line <- Source.fromFile(file).getLines(); if line.startsWith("#");
values = line.split("\t") if values.size >= 2 values = line.split("\t*") if values.size >= 2
) yield Sequence(values(0), values(1))).toList ) yield Sequence(values(0), values(1))).toList
} else Nil } else Nil
} }
......
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