From 5c207b0ba0c9b394672f1eafd5069e374139396b Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 28 Oct 2015 18:25:38 +0100
Subject: [PATCH] Fixed sample settings
---
.../scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
index 2e8de871f..3e0f6a04e 100644
--- a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
+++ b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
@@ -108,7 +108,7 @@ class WriteSummary(val root: Configurable) extends InProcessFunction with Config
qscript match {
case tag: SampleLibraryTag => prefixSampleLibrary(map, tag.sampleId, tag.libId)
case q: MultiSampleQScript => {
- q.samples.map {
+ Map("samples" -> q.samples.map {
case (sampleName, sample) =>
sampleName -> Map(
qscript.summaryName -> Map("settings" -> sample.summarySettings),
@@ -119,7 +119,7 @@ class WriteSummary(val root: Configurable) extends InProcessFunction with Config
)
}
)
- } ++ map
+ }) ++ map
}
case _ => map
}
--
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