Commit 5bc1ea8e authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

Check for bowtie2-Index files in bowtie2

parent e945e4db
......@@ -117,7 +117,7 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref
var no_sq: Boolean = config("no_sq", default = false)
var rg_id: Option[String] = config("rg_id")
var rg: List[String] = config("rg")
var rg: List[String] = config("rg", default = Nil)
var omit_sec_seq: Boolean = config("omit_sec_seq", default = false)
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