Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
5b90369c
Commit
5b90369c
authored
Mar 28, 2017
by
Peter van 't Hof
Browse files
Removing the cd commands inside the job
parent
3019cf79
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
View file @
5b90369c
...
...
@@ -54,7 +54,8 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
}
writer
.
println
(
"set -eubf"
)
writer
.
println
(
"set -o pipefail"
)
lines
.
foreach
(
writer
.
println
)
//lines.foreach(writer.println)
writer
.
println
(
this
.
commandLine
)
jobDelayTime
.
foreach
(
x
=>
writer
.
println
(
s
"sleep $x"
))
writer
.
close
()
}
...
...
@@ -99,6 +100,8 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
beforeGraph
()
internalBeforeGraph
()
this
.
commandDirectory
=
this
.
jobOutputFile
.
getParentFile
super
.
freezeFieldValues
()
}
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment