From 5a85e3c632485bca8aaaa1293bb1e86308b87fb0 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Wed, 1 Jul 2015 11:44:20 +0200
Subject: [PATCH] Should address #164
---
.../scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala | 2 +-
.../scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala b/public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala
index 0f4333919..0631b365b 100644
--- a/public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala
+++ b/public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala
@@ -42,7 +42,7 @@ trait BastyTrait extends MultiSampleQScript {
lazy val shiva: ShivaTrait = new Shiva(qscript)
- def summaryFile: File = new File(outputDir, "Sage.summary.json")
+ def summaryFile: File = new File(outputDir, "Basty.summary.json")
//TODO: Add summary
def summaryFiles: Map[String, File] = Map()
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
index 2a4595afa..ef176ab1e 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -269,7 +269,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
}
}
- lazy val variantcalling = if (config("multisample_sample_variantcalling", default = true).asBoolean) {
+ lazy val variantcalling = if (config("multisample__variantcalling", default = true).asBoolean) {
Some(makeVariantcalling(multisample = true))
} else None
--
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