diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala index 5e80f114c82bd16fb1efd7788158f31d1c2c0f05..a396bb2e15bcf81adb5489b69bab541a8f181794 100644 --- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala +++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala @@ -18,7 +18,6 @@ package nl.lumc.sasc.biopet.pipelines.shiva import java.io.File import htsjdk.samtools.SamReaderFactory -import nl.lumc.sasc.biopet.core.summary.SummaryQScript import nl.lumc.sasc.biopet.core.{ MultiSampleQScript, Reference } import nl.lumc.sasc.biopet.extensions.Ln import nl.lumc.sasc.biopet.extensions.picard.{ AddOrReplaceReadGroups, MarkDuplicates, SamToFastq } @@ -33,7 +32,7 @@ import scala.collection.JavaConversions._ * * Created by pjvan_thof on 2/26/15. */ -trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference { +trait ShivaTrait extends MultiSampleQScript with Reference { qscript => /** Executed before running the script */