From 59923a55513f025f48f13745c00bc2b8dc36f346 Mon Sep 17 00:00:00 2001
From: sajvanderzeeuw <s.a.j.van_der_zeeuw@lumc.nl>
Date: Mon, 18 Jan 2016 16:01:34 +0100
Subject: [PATCH] delete file name file on exit of pipeline
---
.../pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
index c4043d43b..1f13a37c9 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
@@ -39,7 +39,7 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
val sampleFile = new File(outputDir, s"$sample.name.txt")
sampleFile.getParentFile.mkdirs()
- //sampleFile.deleteOnExit()
+ sampleFile.deleteOnExit()
val writer = new PrintWriter(sampleFile)
writer.println(sample)
writer.close()
--
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