diff --git a/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala b/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala index 0a295008278929e07bd629f1211e32298a989a9d..d9c20f6cb4ac2a279adf066289442e5b84d1ca3d 100644 --- a/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala +++ b/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala @@ -93,8 +93,8 @@ object GearsReport extends MultisampleReportBuilder { "Unique mappings" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp", Map("summaryStatsTag" -> "centrifuge_unique_report") )), Map("summaryModuleTag" -> "gearscentrifuge"))) - else Nil) ::: (if (krakenExecuted) List("Kraken" -> ReportPage(List(), List( - "Kraken analysis" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp" + else Nil) ::: (if (krakenExecuted) List("Kraken analysis" -> ReportPage(List(), List( + "Krona plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp" )), Map())) else Nil) ::: (if (qiimeClosesOtuTable.isDefined) List("Qiime closed reference analysis" -> ReportPage(List(), List( "Krona plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/qiimeKrona.ssp" @@ -127,8 +127,8 @@ object GearsReport extends MultisampleReportBuilder { "Unique mappings" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp", Map("summaryStatsTag" -> "centrifuge_unique_report") )), Map("summaryModuleTag" -> "gearscentrifuge"))) - else Nil) ::: (if (krakenExecuted) List("Kraken" -> ReportPage(List(), List( - "Kraken analysis" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp" + else Nil) ::: (if (krakenExecuted) List("Kraken analysis" -> ReportPage(List(), List( + "Krona plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp" )), Map())) else Nil) ::: (if (qiimeClosesOtuTable.isDefined) List("Qiime closed reference analysis" -> ReportPage(List(), List( "Krona plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/qiimeKrona.ssp"