Skip to content

B
biopet.biopet
Commit 55952ce4 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files
Options

Style fixes

parent b83dde9b
Hide whitespace changes
Inline Side-by-side
Showing with 2 additions and 1 deletion
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala
View file @ 55952ce4
......@@ -102,7 +102,8 @@ class CollectMultipleMetrics(val parent: Configurable) extends Picard with Summa
qscript.addSummarizable(summarizable(() => if (!new File(outputName + ".insert_size_metrics").exists()) Map(
"metrics" -> Picard.getMetrics(new File(outputName + ".insert_size_metrics")),
"histogram" -> Picard.getHistogram(new File(outputName + ".insert_size_metrics"))
) else Map()), p, forceSingle = true)
)
else Map()), p, forceSingle = true)
case _ if p == Programs.QualityScoreDistribution.toString =>
qscript.addSummarizable(summarizable(() => Picard.getHistogram(new File(outputName + ".quality_distribution_metrics"))), p, forceSingle = true)
case _ if p == Programs.MeanQualityByCycle.toString =>
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment