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biopet.biopet
Commits
55952ce4
Commit
55952ce4
authored
Mar 01, 2017
by
Peter van 't Hof
Browse files
Style fixes
parent
b83dde9b
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala
View file @
55952ce4
...
...
@@ -102,7 +102,8 @@ class CollectMultipleMetrics(val parent: Configurable) extends Picard with Summa
qscript
.
addSummarizable
(
summarizable
(()
=>
if
(!
new
File
(
outputName
+
".insert_size_metrics"
).
exists
())
Map
(
"metrics"
->
Picard
.
getMetrics
(
new
File
(
outputName
+
".insert_size_metrics"
)),
"histogram"
->
Picard
.
getHistogram
(
new
File
(
outputName
+
".insert_size_metrics"
))
)
else
Map
()),
p
,
forceSingle
=
true
)
)
else
Map
()),
p
,
forceSingle
=
true
)
case
_
if
p
==
Programs
.
QualityScoreDistribution
.
toString
=>
qscript
.
addSummarizable
(
summarizable
(()
=>
Picard
.
getHistogram
(
new
File
(
outputName
+
".quality_distribution_metrics"
))),
p
,
forceSingle
=
true
)
case
_
if
p
==
Programs
.
MeanQualityByCycle
.
toString
=>
...
...
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