From 555cfb5a33b135124f717c6910dc7432a3be559b Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 19 Mar 2016 15:30:33 +0100
Subject: [PATCH] Fix memory
---
.../nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala | 2 +-
.../nl/lumc/sasc/biopet/extensions/qiime/MergeOtuTables.scala | 2 ++
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala
index ce070ccff..db9ed0f7e 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuMaps.scala
@@ -38,7 +38,7 @@ class MergeOtuMaps(val root: Configurable) extends BiopetCommandLineFunction wit
var failuresFp: Option[File] = None
- override def defaultCoreMemory = 8.0
+ override def defaultCoreMemory = 4.0
override def beforeGraph(): Unit = {
super.beforeGraph()
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuTables.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuTables.scala
index 86b481761..1f5d5d1e9 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuTables.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/MergeOtuTables.scala
@@ -36,6 +36,8 @@ class MergeOtuTables(val root: Configurable) extends BiopetCommandLineFunction w
@Output(required = true)
var outputFile: File = _
+ override def defaultCoreMemory = 4.0
+
override def beforeGraph(): Unit = {
super.beforeGraph()
require(input.nonEmpty)
--
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