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biopet.biopet
Commits
5264a9ee
Commit
5264a9ee
authored
Jun 23, 2014
by
Peter van 't Hof
Browse files
memory multiples by the number of threads
parent
e0437d5e
Changes
1
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Inline
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/function/Pbzip2.scala
View file @
5264a9ee
...
...
@@ -21,6 +21,10 @@ class Pbzip2(val root:Configurable) extends BiopetCommandLineFunction {
override
val
defaultVmem
=
(
memory
*
2
/
1000
)
+
"G"
override
val
defaultThreads
=
2
override
def
beforeCmd
{
memory
=
memory
*
threads
}
def
cmdLine
=
required
(
executeble
)
+
conditional
(
decomrpess
,
"-d"
)
+
conditional
(!
decomrpess
,
"-z"
)
+
...
...
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