Commit 50bb1535 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Format fix

parent 1579a88b
......@@ -41,19 +41,19 @@ class FlagstatCollector {
}
/**
* The method will aditional checks based on mapping quality of the sam records.
*
* @param m steps of qaulity
* @param max maximum quality
*/
* The method will aditional checks based on mapping quality of the sam records.
*
* @param m steps of qaulity
* @param max maximum quality
*/
def loadQualityFunctions(m: Int = 10, max: Int = 60): Unit = {
for (t <- 0 to (max / m))
this.addFunction("MAPQ>" + (t * m), record => record.getMappingQuality > (t * m))
}
/**
* This method will add functions to check orientation, for this a combination of flags and read positions are used.
*/
* This method will add functions to check orientation, for this a combination of flags and read positions are used.
*/
def loadOrientationFunctions = {
this.addFunction("First normal, second read inverted (paired end orientation)", record => {
if (record.getReadPairedFlag &&
......
......@@ -9,8 +9,8 @@ import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by pjvan_thof on 21-7-16.
*/
* Created by pjvan_thof on 21-7-16.
*/
class BamStatsTest extends TestNGSuite with Matchers {
@Test
def testMain: Unit = {
......
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