From 50b8f109b13a6eef3acb499593d225467a083516 Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Wed, 22 Mar 2017 17:00:32 +0100 Subject: [PATCH] Fixed output files --- .../nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala | 1 + 1 file changed, 1 insertion(+) diff --git a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala index c2456fb72..479939139 100644 --- a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala +++ b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala @@ -135,6 +135,7 @@ class QcCommand(val parent: Configurable, val fastqc: Fastqc, val read: String) case _ => seqtk.output } t.outputStats = new File(output.getParentFile, s"${flexiprep.sampleId.getOrElse("x")}-${flexiprep.libId.getOrElse("x")}.$read.trim.stats") + outputFiles :+= t.outputStats addPipeJob(t) } -- GitLab