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biopet.biopet
Commits
50b8f109
Commit
50b8f109
authored
Mar 22, 2017
by
Peter van 't Hof
Browse files
Fixed output files
parent
83f7e56d
Changes
1
Hide whitespace changes
Inline
Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
View file @
50b8f109
...
...
@@ -135,6 +135,7 @@ class QcCommand(val parent: Configurable, val fastqc: Fastqc, val read: String)
case
_
=>
seqtk
.
output
}
t
.
outputStats
=
new
File
(
output
.
getParentFile
,
s
"${flexiprep.sampleId.getOrElse("
x
")}-${flexiprep.libId.getOrElse("
x
")}.$read.trim.stats"
)
outputFiles
:+=
t
.
outputStats
addPipeJob
(
t
)
}
...
...
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