Fixed output files

50b8f109 · Peter van 't Hof · 83f7e56d · 50b8f109
Commit 50b8f109 authored Mar 22, 2017 by Peter van 't Hof
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flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala ...a/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala +1 -0

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--- a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
+++ b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
@@ -135,6 +135,7 @@ class QcCommand(val parent: Configurable, val fastqc: Fastqc, val read: String)
        case _       => seqtk.output
      }
      t.outputStats = new File(output.getParentFile, s"${flexiprep.sampleId.getOrElse("x")}-${flexiprep.libId.getOrElse("x")}.$read.trim.stats")
+      outputFiles :+= t.outputStats
      addPipeJob(t)
    }