Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
4fb42a0a
Commit
4fb42a0a
authored
May 09, 2015
by
Peter van 't Hof
Browse files
Raise default memory
parent
2ca7263f
Changes
2
Hide whitespace changes
Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSplitter.scala
View file @
4fb42a0a
...
...
@@ -36,13 +36,12 @@ class FastqSplitter(val root: Configurable) extends BiopetJavaCommandLineFunctio
@Output
(
doc
=
"Output fastq files"
,
shortName
=
"output"
,
required
=
true
)
var
output
:
List
[
File
]
=
Nil
override
val
defaultCoreMemory
=
1
.0
override
val
defaultCoreMemory
=
4
.0
/**
* Generate command to execute
* @return
*/
override
def
commandLine
=
super
.
commandLine
+
required
(
"-I"
,
input
)
+
repeat
(
"-o"
,
output
)
/** * Generate command to execute */
override
def
commandLine
=
super
.
commandLine
+
required
(
"-I"
,
input
)
+
repeat
(
"-o"
,
output
)
}
object
FastqSplitter
extends
ToolCommand
{
...
...
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala
View file @
4fb42a0a
...
...
@@ -48,7 +48,7 @@ class Seqstat(val root: Configurable) extends BiopetJavaCommandLineFunction with
@Output
(
doc
=
"Output JSON"
,
shortName
=
"output"
,
required
=
true
)
var
output
:
File
=
null
override
val
defaultCoreMemory
=
1.0
override
val
defaultCoreMemory
=
2.5
override
def
commandLine
=
super
.
commandLine
+
required
(
"-i"
,
input
)
+
" > "
+
required
(
output
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment