From 4ee4ee23ac0abdcf8a9ab67d1275c971a81374a4 Mon Sep 17 00:00:00 2001
From: Ioannis Moustakas <i.moustakas@lumc.nl>
Date: Thu, 14 Jul 2016 14:11:28 +0200
Subject: [PATCH] Improve phrasing

---
 docs/tools/VepNormalizer.md | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/docs/tools/VepNormalizer.md b/docs/tools/VepNormalizer.md
index a7cc59125..e5624e9a5 100644
--- a/docs/tools/VepNormalizer.md
+++ b/docs/tools/VepNormalizer.md
@@ -3,11 +3,12 @@ VepNormalizer
 
 Introduction
 ------------
-This tool normalizes a VCF file annotated with the Variant Effect Predictor (VEP). 
+This tool modifies a VCF file annotated with the Variant Effect Predictor (VEP). 
 Since the VEP does not use INFO fields to annotate, but rather puts all its annotations in one big string inside a "CSQ" INFO tag it is necessary to normalize it. 
 
-This normalizer will use the information in the CSQ header to create INFO fields for each annotation field. 
-It has two modes: `standard` and `explode`. The `standard` mode will produce a VCF according to the VCF specification.
+Tool will parse the information in the CSQ header to create INFO fields for each annotation field. Tool has two modes: `standard` and `explode`. 
+
+The `standard` mode will produce a VCF according to the VCF specification.
 This means that every VEP INFO tag will consist of the comma-separated list of values for each transcript.
 In case the value is empty, the VEP INFO tag will not be shown for that specific record 
 
@@ -20,6 +21,7 @@ The CSQ tag is by default removed from the output VCF file. If one wishes to ret
 
 Example
 ---------
+Help menu:
 
 ~~~ bash
 biopet tool VepNormalizer -h
-- 
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