Added threads flag

4ede1b88 · Peter van 't Hof · 8a2fdc5a · 4ede1b88
Commit 4ede1b88 authored Jun 07, 2016 by Peter van 't Hof
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/hisat/Hisat2Build.scala ...la/nl/lumc/sasc/biopet/extensions/hisat/Hisat2Build.scala +1 -0

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--- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/hisat/Hisat2Build.scala
+++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/hisat/Hisat2Build.scala
@@ -57,6 +57,7 @@ class Hisat2Build(val root: Configurable) extends BiopetCommandLineFunction with
  }

  def cmdLine = required(executable) +
+    optional("-p", threads) +
    optional("--bmax", bmax) +
    optional("--bmaxdivn", bmaxdivn) +
    optional("--dcv", dcv) +