From 4b3972ae106c56a4653ee211bc5dc5d384e08c35 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sun, 16 Aug 2015 15:26:23 +0200
Subject: [PATCH] Added an exeption when lines has not the same columns as the
header
---
.../main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
index f30a45c01..15b84f086 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
@@ -52,6 +52,7 @@ object SamplesTsvToJson extends ToolCommand {
val librariesValues: List[Map[String, Any]] = for (tsvLine <- lines.tail) yield {
val values = tsvLine.split("\t")
+ require(header.length == values.length, "Number columns is not the same as the header")
val sample = values(sampleColumn)
val library = if (libraryColumn != -1) Some(values(libraryColumn)) else None
if (sampleLibCache.contains((sample, library)))
--
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