Commit 49b6b782 authored by Peter van 't Hof's avatar Peter van 't Hof

Switch to lazy error

parent 608c6349
...@@ -17,6 +17,7 @@ package nl.lumc.sasc.biopet.pipelines.shiva.svcallers ...@@ -17,6 +17,7 @@ package nl.lumc.sasc.biopet.pipelines.shiva.svcallers
import nl.lumc.sasc.biopet.extensions.delly.DellyCaller import nl.lumc.sasc.biopet.extensions.delly.DellyCaller
import nl.lumc.sasc.biopet.extensions.gatk.CatVariants import nl.lumc.sasc.biopet.extensions.gatk.CatVariants
import nl.lumc.sasc.biopet.extensions.picard.SortVcf import nl.lumc.sasc.biopet.extensions.picard.SortVcf
import nl.lumc.sasc.biopet.utils.Logging
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
/** Script for sv caller delly */ /** Script for sv caller delly */
...@@ -77,7 +78,7 @@ class Delly(val root: Configurable) extends SvCaller { ...@@ -77,7 +78,7 @@ class Delly(val root: Configurable) extends SvCaller {
catVariants.variant :+= delly.outputvcf catVariants.variant :+= delly.outputvcf
} }
require(catVariants.variant.nonEmpty, "At least 1 SV-type should be selected for Delly") if (catVariants.variant.isEmpty) Logging.addError("At least 1 SV-type should be selected for Delly")
add(catVariants) add(catVariants)
......
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