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Commit 492dd1a0 authored by Peter van 't Hof's avatar Peter van 't Hof
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Style fixes

parent ffaadd57
Hide whitespace changes
Inline Side-by-side
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/MpileupToVcf.scala
View file @ 492dd1a0
...@@ -191,11 +191,11 @@ object MpileupToVcf extends ToolCommand { ...@@ -191,11 +191,11 @@ object MpileupToVcf extends ToolCommand {
} }
left -= ad(max) left -= ad(max)
} }
writer.println(Array(chr, pos, ".", ref.toUpperCase, (if (alt.nonEmpty) alt.mkString(",") else "<REF>"), ".", ".", info.mkString(";"), writer.println(Array(chr, pos, ".", ref.toUpperCase, if (alt.nonEmpty) alt.mkString(",") else "<REF>", ".", ".", info.mkString(";"),
"GT:" + format.keys.mkString(":"), gt.sortWith(_ < _).mkString("/") + ":" + format.values.mkString(":") "GT:" + format.keys.mkString(":"), gt.sortWith(_ < _).mkString("/") + ":" + format.values.mkString(":")
).mkString("\t")) ).mkString("\t"))
} }
} }
writer.close() writer.close()
} }
} }
\ No newline at end of file
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