From 47decd35dc8a96bd279c36c2734cca47dc7b8902 Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Tue, 28 Oct 2014 19:17:08 +0100
Subject: [PATCH] Remove redundant validation
---
.../nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
index d0f09baaa..21e859cc1 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
@@ -215,11 +215,7 @@ object ExtractAlignedFastq extends ToolCommand {
""".stripMargin)
checkConfig { c =>
- if (!c.inputBam.exists)
- failure("Input BAM file not found")
- else if (!c.inputFastq1.exists)
- failure("Input FASTQ file 1 not found")
- else if (c.inputFastq2 != null && c.outputFastq2 == null)
+ if (c.inputFastq2 != null && c.outputFastq2 == null)
failure("Missing output FASTQ file 2")
else if (c.inputFastq2 == null && c.outputFastq2 != null)
failure("Missing input FASTQ file 2")
--
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