Commit 47c4429a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changed output file to .gz

parent 7b6e8c6e
......@@ -50,7 +50,7 @@ class GatkGenotyping(val root: Configurable) extends QScript with BiopetQScript
}
def addSelectVariants(inputFile: File, samples: List[String], outputDir: String, name: String) {
val selectVariants = SelectVariants(this, inputFile, outputDir + name + ".vcf")
val selectVariants = SelectVariants(this, inputFile, outputDir + name + ".vcf.gz")
selectVariants.excludeNonVariants = true
for (sample <- samples) selectVariants.sample_name :+= sample
add(selectVariants)
......
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