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biopet.biopet
Commits
46647f54
Commit
46647f54
authored
Nov 29, 2016
by
Peter van 't Hof
Browse files
Merge comments
parent
8e18c15e
Changes
2
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biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToConfig.scala
View file @
46647f54
...
...
@@ -39,7 +39,10 @@ object SamplesTsvToConfig extends ToolCommand {
}
opt
[
File
](
'o'
,
"outputFile"
)
unbounded
()
valueName
"<file>"
action
{
(
x
,
c
)
=>
c
.
copy
(
outputFile
=
Some
(
x
))
}
text
"When extension is .yml or .yaml output is in yaml format, otherwise in json. When not given output goes to stdout as yaml."
}
text
"""
|When extension is .yml or .yaml the output is in yaml format, otherwise in json.
|When not given the output goes to stdout as yaml.
"""
.
stripMargin
}
/** Executes SamplesTsvToJson */
...
...
mkdocs.yml
View file @
46647f54
...
...
@@ -21,7 +21,7 @@ pages:
-
Toucan (Annotation)
:
'
pipelines/toucan.md'
-
Tools
:
-
AnnotateVcfWithBed
:
'
tools/AnnotateVcfWithBed.md'
-
SamplesTsvTo
Json
:
'
tools/SamplesTsvToConfig.md'
-
SamplesTsvTo
Config
:
'
tools/SamplesTsvToConfig.md'
-
BedToInterval
:
'
tools/bedtointerval.md'
-
BastyGenerateFasta
:
'
tools/BastyGenerateFasta.md'
-
BedToInterval
:
'
tools/bedtointerval.md'
...
...
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