Commit 44c3611e authored by Sander Bollen's avatar Sander Bollen
Browse files

more spelling

parent 92c23be4
...@@ -96,10 +96,10 @@ object VcfToTsv extends ToolCommand { ...@@ -96,10 +96,10 @@ object VcfToTsv extends ToolCommand {
else false else false
}) })
val witter = if (commandArgs.outputFile != null) new PrintStream(commandArgs.outputFile) val writer = if (commandArgs.outputFile != null) new PrintStream(commandArgs.outputFile)
else sys.process.stdout else sys.process.stdout
witter.println(sortedFields.mkString("#", "\t", "")) writer.println(sortedFields.mkString("#", "\t", ""))
for (vcfRecord <- reader) { for (vcfRecord <- reader) {
val values: Map[String, Any] = Map() val values: Map[String, Any] = Map()
values += "CHROM" -> vcfRecord.getChr values += "CHROM" -> vcfRecord.getChr
...@@ -142,7 +142,7 @@ object VcfToTsv extends ToolCommand { ...@@ -142,7 +142,7 @@ object VcfToTsv extends ToolCommand {
values(f) values(f)
} else "" } else ""
} }
witter.println(line.mkString("\t")) writer.println(line.mkString("\t"))
} }
} }
} }
\ No newline at end of file
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