From 44c3611ec3cb11ddca1e24e1de5004b4ec658864 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Mon, 13 Apr 2015 10:51:10 +0200
Subject: [PATCH] more spelling
---
.../src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
index 37d2470a7..063eca3d7 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfToTsv.scala
@@ -96,10 +96,10 @@ object VcfToTsv extends ToolCommand {
else false
})
- val witter = if (commandArgs.outputFile != null) new PrintStream(commandArgs.outputFile)
+ val writer = if (commandArgs.outputFile != null) new PrintStream(commandArgs.outputFile)
else sys.process.stdout
- witter.println(sortedFields.mkString("#", "\t", ""))
+ writer.println(sortedFields.mkString("#", "\t", ""))
for (vcfRecord <- reader) {
val values: Map[String, Any] = Map()
values += "CHROM" -> vcfRecord.getChr
@@ -142,7 +142,7 @@ object VcfToTsv extends ToolCommand {
values(f)
} else ""
}
- witter.println(line.mkString("\t"))
+ writer.println(line.mkString("\t"))
}
}
}
\ No newline at end of file
--
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