Commit 42b5a991 authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

Fix bwa bug using freeVar=false

parent bba51033
...@@ -94,7 +94,7 @@ class Cutadapt(val root: Configurable) extends BiopetCommandLineFunction with Su ...@@ -94,7 +94,7 @@ class Cutadapt(val root: Configurable) extends BiopetCommandLineFunction with Su
var trimPrimer: Boolean = config("trim_primer", default = false) var trimPrimer: Boolean = config("trim_primer", default = false)
var stripF3: Boolean = config("strip_f3", default = false) var stripF3: Boolean = config("strip_f3", default = false)
var maq: Boolean = config("maq", default = false) var maq: Boolean = config("maq", default = false)
var bwa: Boolean = config("bwa", default = false) var bwa: Boolean = config("bwa", default = false, freeVar = false)
var noZeroCap: Boolean = config("no_zero_cap", default = false) var noZeroCap: Boolean = config("no_zero_cap", default = false)
var zeroCap: Boolean = config("zero_cap", default = false) var zeroCap: Boolean = config("zero_cap", default = false)
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