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biopet.biopet
Commits
4245609f
Commit
4245609f
authored
Oct 03, 2016
by
Peter van 't Hof
Browse files
Fixed arg bug
parent
35bd64d6
Changes
1
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Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala
View file @
4245609f
...
@@ -33,7 +33,7 @@ class CentrifugeKreport(val root: Configurable) extends BiopetCommandLineFunctio
...
@@ -33,7 +33,7 @@ class CentrifugeKreport(val root: Configurable) extends BiopetCommandLineFunctio
def
cmdLine
=
executable
+
def
cmdLine
=
executable
+
conditional
(
onlyUnique
,
"--only-unique"
)
+
conditional
(
onlyUnique
,
"--only-unique"
)
+
conditional
(
showZeros
,
"--show-zeros"
)
+
conditional
(
showZeros
,
"--show-zeros"
)
+
conditional
(
showZero
s
,
"--is-counts"
)
+
conditional
(
isCount
s
,
"--is-counts"
)
+
optional
(
"--min-score="
,
minScore
,
spaceSeparated
=
false
)
+
optional
(
"--min-score="
,
minScore
,
spaceSeparated
=
false
)
+
optional
(
"--min-length="
,
minLength
,
spaceSeparated
=
false
)
+
optional
(
"--min-length="
,
minLength
,
spaceSeparated
=
false
)
+
required
(
"-x"
,
index
)
+
required
(
"-x"
,
index
)
+
...
...
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