From 41e0a2acca050de05b974a7473e4344adf5bf724 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Thu, 27 Aug 2015 14:43:11 +0200
Subject: [PATCH] More message fixes
---
.../scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala
index dafa21f20..e6ffb81df 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala
@@ -29,10 +29,10 @@ object FindRepeatsPacBio extends ToolCommand {
class OptParser extends AbstractOptParser {
opt[File]('I', "inputBam") required () maxOccurs 1 valueName "<file>" action { (x, c) =>
c.copy(inputBam = x)
- }
+ } text "Path to input file"
opt[File]('b', "inputBed") required () maxOccurs 1 valueName "<file>" action { (x, c) =>
c.copy(inputBed = x)
- } text "output file, default to stdout"
+ } text "Path to bed file"
}
/**
--
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