diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala index c42f2ced1f5776c88131c1b466c7b162d7c875b1..c6ed2e6e49ea70c6e2b3cde5b80092b6fc32e34c 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala @@ -27,8 +27,8 @@ class WigToBigWig(val root: Configurable) extends BiopetCommandLineFunction { var unc: Boolean = config("unc", default = false) def cmdLine = required(executable) + - optional("blockSize=", blockSize, spaceSeparated = false) + - optional("itemsPerSlot=", itemsPerSlot, spaceSeparated = false) + + optional("-blockSize=", blockSize, spaceSeparated = false) + + optional("-itemsPerSlot=", itemsPerSlot, spaceSeparated = false) + conditional(clip, "-clip") + conditional(unc, "-unc") + required(inputWigFile) +