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biopet.biopet
Commit 3d2cbc8a authored by akaljuvee's avatar akaljuvee
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parent 273091b4
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
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...@@ -43,7 +43,7 @@ class VcfStatsForSv(val parent: Configurable) extends ToolCommandFunction with S ...@@ -43,7 +43,7 @@ class VcfStatsForSv(val parent: Configurable) extends ToolCommandFunction with S
required("-o", outputFile) + required("-o", outputFile) +
repeat("--histBinBoundaries", histogramBinBoundaries) repeat("--histBinBoundaries", histogramBinBoundaries)
def summaryStats: Map[String, Any] = ConfigUtils.fileToConfigMap(outputFile) def summaryStats: Map[String, Any] = ConfigUtils.yamlToMap(outputFile)
def summaryFiles: Map[String, File] = Map.empty def summaryFiles: Map[String, File] = Map.empty
......
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