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biopet.biopet
Commits
3d2cbc8a
Commit
3d2cbc8a
authored
Apr 20, 2017
by
akaljuvee
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
.../nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
View file @
3d2cbc8a
...
@@ -43,7 +43,7 @@ class VcfStatsForSv(val parent: Configurable) extends ToolCommandFunction with S
...
@@ -43,7 +43,7 @@ class VcfStatsForSv(val parent: Configurable) extends ToolCommandFunction with S
required
(
"-o"
,
outputFile
)
+
required
(
"-o"
,
outputFile
)
+
repeat
(
"--histBinBoundaries"
,
histogramBinBoundaries
)
repeat
(
"--histBinBoundaries"
,
histogramBinBoundaries
)
def
summaryStats
:
Map
[
String
,
Any
]
=
ConfigUtils
.
fileToConfig
Map
(
outputFile
)
def
summaryStats
:
Map
[
String
,
Any
]
=
ConfigUtils
.
yamlTo
Map
(
outputFile
)
def
summaryFiles
:
Map
[
String
,
File
]
=
Map
.
empty
def
summaryFiles
:
Map
[
String
,
File
]
=
Map
.
empty
...
...
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