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3d2cbc8a · akaljuvee · 273091b4 · 3d2cbc8a
Commit 3d2cbc8a authored Apr 20, 2017 by akaljuvee
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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala .../nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala +1 -1

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--- a/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
+++ b/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStatsForSv.scala
@@ -43,7 +43,7 @@ class VcfStatsForSv(val parent: Configurable) extends ToolCommandFunction with S
    required("-o", outputFile) +
    repeat("--histBinBoundaries", histogramBinBoundaries)

-  def summaryStats: Map[String, Any] = ConfigUtils.fileToConfigMap(outputFile)
+  def summaryStats: Map[String, Any] = ConfigUtils.yamlToMap(outputFile)

  def summaryFiles: Map[String, File] = Map.empty