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biopet.biopet
Commits
3cf5aec9
Commit
3cf5aec9
authored
Jun 07, 2015
by
Peter van 't Hof
Browse files
Fix table hide
parent
be30372c
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
3cf5aec9
...
...
@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.pipelines.shiva
import
java.io.
{
PrintWriter
,
File
}
import
nl.lumc.sasc.biopet.core.config.Configurable
import
nl.lumc.sasc.biopet.core.report.
{
ReportBuilderExtension
,
ReportSection
,
MultisampleReportBuilder
,
ReportPage
}
import
nl.lumc.sasc.biopet.core.report.
_
import
nl.lumc.sasc.biopet.core.summary.
{
SummaryValue
,
Summary
}
import
nl.lumc.sasc.biopet.extensions.rscript.StackedBarPlot
import
nl.lumc.sasc.biopet.pipelines.bammetrics.BammetricsReport
...
...
@@ -49,7 +49,7 @@ object ShivaReport extends MultisampleReportBuilder {
"Insert Size"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp"
,
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
false
)),
"QC reads"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
tru
e
)),
Map
(
"showPlot"
->
true
,
"showTable"
->
fals
e
)),
"QC bases"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
false
))
),
...
...
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