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biopet.biopet
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3c7e15c0
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3c7e15c0
authored
Mar 22, 2017
by
Giannis Moustakas
Committed by
GitHub
Mar 22, 2017
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Update DownloadNcbiAssembly.md
Improved phrasing
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docs/tools/DownloadNcbiAssembly.md
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@@ -20,11 +20,11 @@ Usage: DownloadNcbiAssembly [options]
-o <file> | --output <file>
output Fasta file
--report <file>
where to write report from
ncbi
where to write report from
NCBI
--nameHeader <string>
Wh
at
column to use from the NCBI report
for the
name
of
the contigs.
All columns
in
the report can be used but th
is
are the most common field to choose from:
Wh
ich
column to use from the NCBI report
to
name the contigs.
All columns
from
the report can be used but th
ese
are the most common field
s
to choose from:
- 'Sequence-Name': Name of the contig within the assembly
- 'UCSC-style-name': Name of the contig used by UCSC ( like hg19 )
- 'RefSeq-Accn': Unique name of the contig at RefSeq (default for NCBI)
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