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biopet.biopet
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3c7e15c0
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3c7e15c0
authored
Mar 22, 2017
by
Giannis Moustakas
Committed by
GitHub
Mar 22, 2017
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Update DownloadNcbiAssembly.md
Improved phrasing
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docs/tools/DownloadNcbiAssembly.md
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@@ -20,11 +20,11 @@ Usage: DownloadNcbiAssembly [options]
-o <file> | --output <file>
output Fasta file
--report <file>
where to write report from
ncbi
where to write report from
NCBI
--nameHeader <string>
Wh
at column to use from the NCBI report for the name of
the contigs.
All columns
in the report can be used but this are the most common field
to choose from:
Wh
ich column to use from the NCBI report to name
the contigs.
All columns
from the report can be used but these are the most common fields
to choose from:
- 'Sequence-Name': Name of the contig within the assembly
- 'UCSC-style-name': Name of the contig used by UCSC ( like hg19 )
- 'RefSeq-Accn': Unique name of the contig at RefSeq (default for NCBI)
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