Commit 3c73be57 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Change from error to warning

parent 86ecb782
......@@ -153,8 +153,8 @@ class Mapping(val root: Configurable) extends QScript with SummaryQScript with S
require(inputR1 != null, "Missing inputR1 on mapping module")
require(sampleId.isDefined, "Missing sample ID on mapping module")
require(libId.isDefined, "Missing library ID on mapping module")
if (inputR1.exists() && inputR1.length() == 0) Logging.addError(s"Input R1 is a empty file: $inputR1")
inputR2.foreach(r => if (r.exists() && r.length() == 0) Logging.addError(s"Input R2 is a empty file: $r"))
if (inputR1.exists() && inputR1.length() == 0) logger.warn(s"Input R1 is a empty file: $inputR1")
inputR2.foreach(r => if (r.exists() && r.length() == 0) logger.warn(s"Input R2 is a empty file: $r"))
inputFiles :+= new InputFile(inputR1)
inputR2.foreach(inputFiles :+= new InputFile(_))
......
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