Commit 3b829793 authored by Moustakas's avatar Moustakas
Browse files

versionRegex fit for old and new Delly

parent f9890b7f
......@@ -36,7 +36,7 @@ class DellyCallerCall(val parent: Configurable)
override def defaultCoreMemory = 4.0
def versionCommand = versionexecutable.getAbsolutePath
def versionRegex = """Delly \(Version: (.*)\)""".r
def versionRegex = """D(ELLY|elly) \(Version: (.*)\)""".r
override def versionExitcode = List(0, 1)
@Input(doc = "Input file (bam)")
var input: File = _
......
......@@ -231,6 +231,7 @@ object ShivaSvCallingTest {
copyFile("ref.dict")
copyFile("ref.fa.fai")
// A dummy config file. Tools being used by this test must be included
def config(outputDir: File) = Map(
"skip_write_dependencies" -> true,
"name_prefix" -> "test",
......
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