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biopet.biopet
Commits
394ba9f1
Commit
394ba9f1
authored
Jul 25, 2017
by
Peter van 't Hof
Browse files
Style fixes
parent
702b064e
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/stringtie/StringtieMerge.scala
View file @
394ba9f1
...
...
@@ -41,17 +41,17 @@ class StringtieMerge(val parent: Configurable)
def
cmdLine
:
String
=
required
(
executable
)
+
required
(
"--merge"
)
+
conditional
(
v
,
"-v"
)
+
required
(
"-p"
,
threads
)
+
optional
(
"-l"
,
l
)
+
optional
(
"-f"
,
f
)
+
optional
(
"-m"
,
m
)
+
optional
(
"-c"
,
c
)
+
optional
(
"-F"
,
F
)
+
conditional
(
i
,
"-i"
)
+
optional
(
"-G"
,
referenceGtf
)
+
(
if
(
outputAsStdout
)
""
else
required
(
"-o"
,
outputGtf
))
+
repeat
(
inputGtfs
)
required
(
"--merge"
)
+
conditional
(
v
,
"-v"
)
+
required
(
"-p"
,
threads
)
+
optional
(
"-l"
,
l
)
+
optional
(
"-f"
,
f
)
+
optional
(
"-m"
,
m
)
+
optional
(
"-c"
,
c
)
+
optional
(
"-F"
,
F
)
+
conditional
(
i
,
"-i"
)
+
optional
(
"-G"
,
referenceGtf
)
+
(
if
(
outputAsStdout
)
""
else
required
(
"-o"
,
outputGtf
))
+
repeat
(
inputGtfs
)
}
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