Commit 38acf7e0 authored by sajvanderzeeuw's avatar sajvanderzeeuw
Browse files

Merge commit 'feeafebb' into sander

parents b68ea4a6 feeafebb
......@@ -147,7 +147,7 @@ class FlexiprepSummary(val root: Configurable) extends InProcessFunction with Co
val s = for ((key, value) <- chunks) yield value.seqstatR1after.getSummary
Option(Seqstat.mergeSummarys(s.toList))
}
val R2_proc: Option[Json] = if (!flexiprep.paired && flexiprep.skipClip && flexiprep.skipTrim) None
val R2_proc: Option[Json] = if (!flexiprep.paired || (flexiprep.skipClip && flexiprep.skipTrim)) None
else if (chunks.size == 1) Option(chunks.head._2.seqstatR2after.getSummary)
else {
val s = for ((key, value) <- chunks) yield value.seqstatR2after.getSummary
......
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