From 38824296bbd895567e54199b50ab4fad80df816d Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 30 Mar 2016 20:59:01 +0200
Subject: [PATCH] Fixed pysvtools
---
.../main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala
index d9ee8e68a..e7b87696b 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Pysvtools.scala
@@ -33,7 +33,7 @@ class Pysvtools(val root: Configurable) extends BiopetCommandLineFunction {
@Argument(doc = "Set flanking amount")
var flanking: Option[Int] = config("flanking")
- var exclusionRegions: List[File] = config("exclusion_regions")
+ var exclusionRegions: List[File] = config("exclusion_regions", default = Nil)
var translocationsOnly: Boolean = config("translocations_only", default = false)
@Output(doc = "Unzipped file", required = true)
--
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