diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
index 11e094c6c155cd08f8051238b047e7d1bba648af..65f73c356aa8dd75f6c7505737f9f2fd6f2dd9ef 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
@@ -36,7 +36,8 @@ object BiopetExecutable extends Logging {
       nl.lumc.sasc.biopet.tools.BedtoolsCoverageToCounts,
       nl.lumc.sasc.biopet.tools.SageCountFastq,
       nl.lumc.sasc.biopet.tools.SageCreateLibrary,
-      nl.lumc.sasc.biopet.tools.SageCreateTagCounts)
+      nl.lumc.sasc.biopet.tools.SageCreateTagCounts,
+      nl.lumc.sasc.biopet.tools.MergeAlleles)
   )
 
   /**