From 3805c9eda9ceddbf8bc4a99eb8c28b76353f18cf Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 7 Aug 2014 16:57:17 +0200
Subject: [PATCH] Change output to logger output
---
.../src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
index a5dbc7125..41454c2f4 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
@@ -74,7 +74,7 @@ class Ln(val root: Configurable) extends InProcessFunction with Configurable {
override def run {
val process = Process(cmd).run
- System.out.println("cmd: '" + cmd + "', exitcode: " + process.exitValue)
+ logger.info("cmd: '" + cmd + "', exitcode: " + process.exitValue)
}
}
--
GitLab