diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala index 69ed9e5aaf4c83d8f022e1cedf4d79ff8796f930..c69bdd6926924687ec04ef3b1a16588ea01987d9 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/centrifuge/CentrifugeKreport.scala @@ -26,6 +26,8 @@ class CentrifugeKreport(val root: Configurable) extends BiopetCommandLineFunctio var minScore: Option[Double] = config("min_score") var minLength: Option[Int] = config("min_length") + override def defaultCoreMemory = 4.0 + executable = config("exe", default = "centrifuge-kreport", freeVar = false) def cmdLine = executable +