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biopet.biopet
Commits
347f6200
Commit
347f6200
authored
Mar 09, 2017
by
Peter van 't Hof
Browse files
Format fix
parent
80210c06
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfStatsTest.scala
View file @
347f6200
...
...
@@ -15,10 +15,10 @@
package
nl.lumc.sasc.biopet.tools
import
java.io.File
import
java.nio.file.
{
Files
,
Paths
}
import
java.nio.file.
{
Files
,
Paths
}
import
htsjdk.variant.vcf.VCFFileReader
import
nl.lumc.sasc.biopet.tools.vcfstats.
{
SampleStats
,
SampleToSampleStats
,
Stats
,
VcfStats
}
import
nl.lumc.sasc.biopet.tools.vcfstats.
{
SampleStats
,
SampleToSampleStats
,
Stats
,
VcfStats
}
import
nl.lumc.sasc.biopet.tools.vcfstats.VcfStats._
import
org.scalatest.Matchers
import
org.scalatest.testng.TestNGSuite
...
...
@@ -170,7 +170,7 @@ class VcfStatsTest extends TestNGSuite with Matchers {
val
vcf
=
resourcePath
(
"/chrQ.vcf.gz"
)
val
ref
=
resourcePath
(
"/fake_chrQ.fa"
)
an
[
IllegalArgumentException
]
should
be
thrownBy
main
(
Array
(
"-I"
,
vcf
,
"-R"
,
ref
,
"-o"
,
tmp
.
toAbsolutePath
.
toString
))
an
[
IllegalArgumentException
]
should
be
thrownBy
main
(
Array
(
"-I"
,
vcf
,
"-R"
,
ref
,
"-o"
,
tmp
.
toAbsolutePath
.
toString
))
}
@Test
...
...
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