diff --git a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala index 6d3dd7c3f5fc1258df8b63315defb59c736b751c..3da6d434da304c4fa5eb9dabded3fd266fdb3800 100644 --- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala +++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala @@ -32,7 +32,10 @@ class ShivaReport(val root: Configurable) extends ReportBuilderExtension { } /** Object for report generation for Shiva pipeline */ -object ShivaReport extends MultisampleMappingReportTrait { +object ShivaReport extends ShivaReportTrait + +/** Trait for report generation for Shiva pipeline, this can be extended */ +trait ShivaReportTrait extends MultisampleMappingReportTrait { def variantcallingExecuted = summary.getValue("shiva", "settings", "multisample_variantcalling") match { case Some(true) => true