From 32ff5441b1ed050611441e77faf8afb872e56606 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 9 Sep 2015 10:05:24 +0200
Subject: [PATCH] Adding basic unit tests
---
.../sasc/biopet/core/BiopetPipeTest.scala | 45 +++++++++++++++++++
1 file changed, 45 insertions(+)
create mode 100644 public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/BiopetPipeTest.scala
diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/BiopetPipeTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/BiopetPipeTest.scala
new file mode 100644
index 000000000..bac6932dd
--- /dev/null
+++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/BiopetPipeTest.scala
@@ -0,0 +1,45 @@
+package nl.lumc.sasc.biopet.core
+
+import org.scalatest.Matchers
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+
+/**
+ * Created by pjvanthof on 09/09/15.
+ */
+class BiopetPipeTest extends TestNGSuite with Matchers {
+ class Pipe1 extends BiopetCommandLineFunction {
+ val root = null
+ def cmdLine = "pipe1" +
+ (if (!inputAsStdin) " input1 " else "") +
+ (if (!outputAsStsout) " output1 " + "")
+ }
+
+ class Pipe2 extends BiopetCommandLineFunction {
+ val root = null
+ def cmdLine = "pipe2" +
+ (if (!inputAsStdin) " input2 " else "") +
+ (if (!outputAsStsout) " output2 " + "")
+ }
+
+ @Test def testPipeCommands: Unit = {
+ val pipe1 = new Pipe1
+ val pipe2 = new Pipe2
+ pipe1.commandLine.contains("pipe1") shouldBe true
+ pipe1.commandLine.contains("input1") shouldBe true
+ pipe1.commandLine.contains("output1") shouldBe true
+ pipe2.commandLine.contains("pipe2") shouldBe true
+ pipe2.commandLine.contains("input2") shouldBe true
+ pipe2.commandLine.contains("output2") shouldBe true
+ }
+
+ @Test def testPipe: Unit = {
+ val pipe = new Pipe1 | new Pipe2
+ pipe.commandLine.contains("pipe1") shouldBe true
+ pipe.commandLine.contains("input1") shouldBe true
+ pipe.commandLine.contains("output1") shouldBe false
+ pipe.commandLine.contains("pipe2") shouldBe true
+ pipe.commandLine.contains("input2") shouldBe false
+ pipe.commandLine.contains("output2") shouldBe true
+ }
+}
--
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