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biopet.biopet
Commits
3287d8c4
Commit
3287d8c4
authored
Apr 20, 2017
by
Peter van 't Hof
Browse files
Moved value to the correct place
parent
e7cccb43
Changes
1
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
View file @
3287d8c4
...
...
@@ -67,6 +67,8 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
val
skipWriteDependencies
:
Boolean
=
config
(
"skip_write_dependencies"
,
default
=
false
)
val
writeHtmlReport
:
Boolean
=
config
(
"write_html_report"
,
default
=
true
)
/** Script from queue itself, final to force some checks for each pipeline and write report */
final
def
script
()
{
outputDir
=
config
(
"output_dir"
)
...
...
@@ -126,8 +128,6 @@ trait BiopetQScript extends Configurable with GatkLogging { qscript: QScript =>
}
})
val
writeHtmlReport
:
Boolean
=
config
(
"write_html_report"
,
default
=
true
)
if
(
writeHtmlReport
)
{
logger
.
info
(
"Adding report"
)
this
match
{
...
...
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