From 3260f7423917987b480d0da1ebbbe9fbafe90202 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 6 Feb 2015 17:11:07 +0100
Subject: [PATCH] Moved freeze function
---
.../sasc/biopet/core/BiopetCommandLineFunctionTrait.scala | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
index 4a5b25f7a..9382f779a 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
@@ -51,6 +51,9 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
override def freezeFieldValues() {
checkExecutable
afterGraph
+
+ super.freezeFieldValues()
+
if (jobOutputFile == null) jobOutputFile = new File(firstOutput.getParent + "/." + firstOutput.getName + "." + configName + ".out")
if (threads == 0) threads = getThreads(defaultThreads)
@@ -62,8 +65,6 @@ trait BiopetCommandLineFunctionTrait extends CommandLineFunction with Configurab
}
if (vmem.isDefined) jobResourceRequests :+= "h_vmem=" + vmem.get
jobName = configName + ":" + (if (firstOutput != null) firstOutput.getName else jobOutputFile)
-
- super.freezeFieldValues()
}
protected def checkExecutable {
--
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