From 318fafaa9103e587147180adcb30293775088b15 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 8 Apr 2016 13:52:17 +0200
Subject: [PATCH] Added a default for snptest
---
.../scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTest.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/public/gwas-test/src/main/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTest.scala b/public/gwas-test/src/main/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTest.scala
index 9ee6d5952..d65b658f3 100644
--- a/public/gwas-test/src/main/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTest.scala
+++ b/public/gwas-test/src/main/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTest.scala
@@ -50,6 +50,8 @@ class GwasTest(val root: Configurable) extends QScript with BiopetQScript with R
override def dictRequired = true
+ override def defaults = Map("snptest" -> Map("genotype_field" -> "GP"))
+
/** Init for pipeline */
def init(): Unit = {
inputGens.foreach { g =>
--
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